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Bioinformatics Software Engineer II, Pathology and Lab Medicine

Memorial Sloan-Kettering Cancer Center

Details

Posted: 14-Jun-26

Location: New York, New York

Type: Full-time

Internal Number: 95646

About Us:

The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative translational and clinical research that is driving a revolution in our understanding of cancer as a disease and improving the ability to prevent, diagnose, and treat it. MSK is dedicated to training the next generation of scientists and clinicians, who go on to pursue our mission at MSK and around the globe.

Exciting Opportunity at MSK! Our Pathology and Laboratory Medicine Department is looking for a Bioinformatics Software Engineer to join a dynamic team supporting state-of-the-art molecular diagnostics and cancer genomics programs. You will play a key role in developing software tools, web applications, and data workflows that empower our clinicians and researchers to interpret complex genomic information and advance precision oncology.

Role Overview

* Build web applications and APIs that enable genomic data visualization and clinical reporting

* Collaborate closely with bioinformaticians, laboratory scientists, researchers, and clinicians to translate workflow needs into robust software solutions

* Develop, optimize, and maintain computational workflows for NGS data processing

* Improve performance, scalability, and reliability of existing pipelines and tools

* Ensure data quality, reproducibility, and proper documentation across all projects

Key Qualifications

* BS in Bioinformatics, Computer Science, or related field + 5 years of experience OR MS in Bioinformatics, Computer Science, or related field + 2 years of experience

* Strong programming skills in Python

* Experience in web development (e.g., Flask, Django, React)

* Experience with relational databases (PostgreSQL, MySQL) and/or NoSQL (MongoDB)

* Hands-on experience with containerization (Docker, Kubernetes)

* Familiarity with version control (Git/GitHub) and CI/CD workflows

* Understanding of NGS data analysis workflows

* Strong debugging, analytical, and problem-solving skills

Preferred:

* Experience with cloud computing (AWS, GCP, or Azure)

* Knowledge of cancer genomics, variant calling, and annotation

Core Skills

* Ability to translate scientific and clinical needs into maintainable, well-designed software

* Strong communication skills and comfort collaborating with multidisciplinary teams

* Ability to work in fast-paced research and clinical environments

* Commitment to reproducible, traceable, and well-documented work

Additional Information

* Schedule: hybrid, at least 2 days a week in office, must reside in the NYC metro area

* Location: Joy Building, 321 E 61st Street, NYC

* Reporting to: Manager, Bioinformatics Pathology and Laboratory Medicine

Helpful Links:

Pay Range: $100,600.00 - $161,000.00

FSLA Status: Exempt

Closing:

At MSK, we believe in fair, competitive pay that reflects your job, experience, and skills.

MSK is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sexual orientation, national origin, age, religion, creed, disability, veteran status or any other factor which cannot lawfully be used as a basis for an employment decision.

Federal law requires employers to provide reasonable accommodation to qualified individuals with disabilities. Please tell us if you require a reasonable accommodation to apply for a job or to perform your job. Examples of reasonable accommodation include making a change to the application process or work procedures, providing documents in an alternate format, using a sign language interpreter, or using specialized equipment.

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About Memorial Sloan-Kettering Cancer Center

MSK is the world's oldest and largest private institution devoted to the prevention, treatment, and cure of cancer. Founded in 1884, MSK has long been a leader in early detection, precise diagnosis, and individually tailored treatments for cancer. We continue to drive innovations as one of 52 National Cancer Institute–designated Comprehensive Cancer Centers, with state-of-the-art science flourishing side by side with clinical studies and treatment. The close collaboration between our scientists and physicians is one of our unique strengths, enabling us to provide patients with the best care available as we work to discover more-effective strategies to prevent, control, and ultimately cure cancer in the future. Our education programs train future scientists and physicians, and the knowledge and experience they gain at MSK has an impact on cancer treatment and biomedical research around the world.

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